GgaINT0124236 @ galGal3
Intron Retention
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2385712-2388456:+
Coord C1 exon
chr17:2385712-2386117
Coord A exon
chr17:2386118-2386828
Coord C2 exon
chr17:2386829-2388456
Length
711 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GTTCTTTGTTTTCCCTACAGAGG
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTTTCCCTCAAGTCACCAGAGGTTTCGGTCACCCTTCCCATTTATATCGGCAACATTGCAGTGAACAGGGTCCCCCTGAGCCCTTCCCGGTCTGTCCAGCACCTACCATCTGCAGTGGTACCCAGTGCCCCCCCGGAGGAAGAGGAGGCTGCCGGCGGTTATCACCCCATGGACAATGTCTTGATCCCCACCAAAAGCCATTCCCAGCAGCAGCCATTTAGCTACGCCCCAGGACTGAGCTTCCAGGAAGCGGACTCGGAGCAGACAGGCTCCCCAAATCACCCCACCCTCTGCCTCTCGACGGGAGCCACCGTCCCTTACTACGCCGAGGGAAACGTGGTGCCCGTGCCCACTGCTAGCTCGCTCATTTTGCCTCCAGAATACAGCACGTGGGGCTACCCATACG
Seq A exon
GTGAGCATCCCATTCCTGAGACCTAAACAGTCTGGCAGTGTGATAGCAAACATCTGCTGTGACAAGAGTCTCTTTGCTAGCTGAAAAGCCTGGAATACAGAGATGTCAGCCCGCCGGGGGCTGAAGTCAGGGGGGATTGTGAGAACTCTCTGCCTGCCTTTTCTGGAGGAGCTCCTTGTGGCTGTGACAGCCAGCTGTCCATTCCCACGTCCACACCCGTGCTGCCCTAGGCTTGTTCTGAGAGGATCTCCCTGCTCTGAAATGAGCTTTCAGCCTCCCACAGATATAAAAACTCCTTGGCTTGTGGTGAGGCTGGCGGGAGCAGAGCCAGGAAAGTGATGTAACTGAAATCTTATGTCTGCTTTGGAGTGGGCCTGCATCTGGTCTGGAGACAGAAGCTGTGGGGGCGGGCACTGAGAGACTGTCCAGGATGGAAGAGCTTGGGGAAATCCCAGCACGCTGCATTCCTGAAGCAGTACTCCTCTGGGGTGGCTGGGACCGGTGGTGTGGCACAGTCCTACCTGGGTAAGCCAGACAGTTAGCACTGGGGTGATGAGAGATGCTTGGATGTGTCACATCAGCAGGGCAGGCTGTAGGGTCCTGGAGTGCCTGCACACGTTAGTAGCTTGCTATGCTCAGTACTGAATTACACAGATGGAGGTTCGTGGAACTTCCCACTGTAACCATTCTTGTTCTTTGTTTTCCCTACAG
Seq C2 exon
AGGCACCTCCATCCTATGAGCAGAGCTGCAGCAGTGCCAACTCCAGCATCAGCAATGGCAACTAGCCTCCCCTGCTCCGCATCCCGTCGGCGCGATGGTTCACCGGCCTGCTGCGAAGTCTGGTACAGCACAAGGCGTCCTTTTATCTCTGTGGCTGCTTGGCAGAGTAGATGGCACATCCTGGCCTGGGCTTTTTAAGTCTCTTTCTTGGGAGGGGGAAGAAAAAAGGGCAGCCAGGGCAGCCCGTGTTGTGTGTGGGAGAAGTCTGAACCATCCCCTTCTGCTGCACCAAAAGCTGGAAGATCTGGTCTTGCCCCGGGGATGCCCTCTGCAGCAGCCTGTATTTGAAGTACTGTAGTCACCACTAACTGCTTTACTATCAAAGCACCTCCGATGCCTTATCTGAAATGCTCCTGACTTGGCATGTCTCCACTGTAGGTGAAGGCTGGGCTGTGTGAACTTCCTCTTCTCTTTTGTGGGCTGTGTGTGCTCTCCAGAAATGCTTCTGACAGCCCTTCCTCCTCATCCCCATAGGTCCCAGGGGTAGCTGAAACAGGGGCTTTCTTGGAGTAGGCAGGGTTGGAAGGTCAGGGACTCTTGCCAAGCCAAAAGCACAAGCCCTCGCTGTACCTGCGTGGTGGGATGAGTGACTGGCAGCCTTTGGTCCCCGGGCAGTGGCCTGGACCGCCGCCTGCTTGTGCTGAGTGGAGAGCAGGCTCTGTCAGCAGGGAGCCTTTTTAACGAGGATAACTTTCTAGAGACAGACCATCCTTGCTTGCTGCTAGGATGACCAGCGCTTGTCAATCTGTACAGGGGACACCAGCTCCCGTGCCCCATCTCCTGCTCCTGCAGGGCACCCTCTCCATCCCAGCTGTCGCGGCCTTAGGCAGGCCAGAATTACACGACAATCAAGTTACAGAAGTGTGTCCGATGCTACCTCTGCGTCTGCCCAAGGACTCTGCCCGTGGAAGCCCCATCCTTGGTGATGCCCCCCTGTCCAGGCTCAGCCTGGCACTGTGCTCCCCGGTACCACACCAGCACGGGGGGCTGCACAGCCCGGGGACGGCCGGTACTGCTGTGCTGCTCCTCTCCTGAGCCACTGCAGGGTGCAGAACGGAGAGAGTGGGAACACAAACTGCTGTGCTTCATCTGCAGCCTCTGCTGGACCTGGCGGGTCAGGGGAGGAAGCTGGGATACCGAAAGCAACGGTTTTTTTGGTTTTTGTTTTCTTCCTGTTGTTTTATTTCCTTGTTTAGCTTTTTAGCATTGACTGCCCAAGCTGAGGAAACCAAACAGGGGACACAGAGCTGCGGGCGTCCGGCCAGGGCTGCCATTGCAGACTGCACCTTTGGCACCTCTGAGAATTGGTCCCGCACTTCCTCACGCTGGGCAGGCAATACCTAACAAACCTCCTAGGAGCTGTGCTGCCTCACACCCCCGGCCGGCTGCTGGGGACGAGCCCTGCTTTGCACTCTTCCTTTGCGAAACCCTTTTTGTTTTATTTTGTTTTAAAAGTGTTGAATTGCTTTAAGGGTAGAGTAGAGAAGGTGCCGTTCTGAGCAGCGCCGGCACAACATATACCCGTGTTGATAGAATGATTGTCATTGTCCTTAAATATATATATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475:ENSGALT00000013811:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=14.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACAGCACGTGGGGCTAC
R:
GGCAAGACCAGATCTTCCAGC
Band lengths:
343-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]