RnoINT0021397 @ rn6
Intron Retention
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2129879-2130728:-
Coord C1 exon
chr3:2130290-2130728
Coord A exon
chr3:2130209-2130289
Coord C2 exon
chr3:2129879-2130208
Length
81 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTTTTTTTCCTCCCCACAGAGG
3' ss Score
12.72
Exon sequences
Seq C1 exon
GTCTCCATGAAAGCACCCGAGGCCACCGTGACTCTCCCACTATTTGTTGGCAATATTGCTGTGAACCAAACTCCACTGAGCCCCTGTCCAGGCCCAGGGTCTTCTCCTGGGCTGCTGTCCCCAGTGGTGCCCTCTGCACCTCCTCAGGAAGAGGCTGAGGCAGTGGCTAGTGGCCCTCACTTCTCAGACCCTGTCTCACTCTCCACCAAGAGCCATTCTCAGCAGCAGCCACTGTCTACTACATTGGGTTCTGTGTCTGTCACCACCATTGAGCCGTGTGTTCAGGTTGGAAGTCCTGCTAGACATTCTCTGCACCCTCCCTTGTGCATCTCTATAGGTGCCACTGTCCCCTACTTTGCAGAAGGCTCTGGGGGCCCAGTACCTACCACCAGCGCCTTGATCCTTCCTCCAGAGTACAGTTCATGGGGCTACCCCTATG
Seq A exon
GTGAGTGGAAATGACAGGGATTGGGGTGAAAAAATGAGGGTCCCCTGAACCCCTTCTATATCCTTTTTTTCCTCCCCACAG
Seq C2 exon
AGGCTCCACCATCCTATGAGCAGAGCTGTGGTGCTGGTGGTACAGATGTTGGCCTGATCCCAGGGAGCTGACCCTGGTATGCTAACCCATGCCACCTTGTTTGGTGGTTCTGGCCTTTGCCCTGGCATGGGATGCCCAGGGCCTCGTGCCTTTGCTCTCTACCTGGCCCAGCTACTCAGGACCTGCAGCTGTCGGGGGAAGACCCCCCTGTGGACCAGCCACTCTTGGCTCCTCTGGAATGAATTATTCAGTCCTCTTCTTGAGAGGTTGGGGTAGGGCGGCAGAGATCTGGGGCCTGGAGAGACTGTATAAATAAAGCGCTTTATTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622:ENSRNOT00000010169:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=13.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCTACTTTGCAGAAGGC
R:
TAGCATACCAGGGTCAGCTCC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]