DreINT0033644 @ danRer10
Intron Retention
Gene
ENSDARG00000079839 | arrdc1b
Description
arrestin domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-080515-2]
Coordinates
chr21:14599906-14605514:-
Coord C1 exon
chr21:14605046-14605514
Coord A exon
chr21:14603032-14605045
Coord C2 exon
chr21:14599906-14603031
Length
2014 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCATTTACTCTAATTTTCAGAGC
3' ss Score
8.51
Exon sequences
Seq C1 exon
GTTTCACTAAAATCTCCTGAGGCTGCGGTCACGTTACCCATCTACATTGGGAACATTGCTGTAAACTTGACTCCTTCAATTCCTCACCCTATGGCTCATGGTGTCCCGATGCCCACCGGGCCGAGTCTCAATCCAGCAGCTGTAGTCCCGAGTGCACCTCCTGTAGAGGAGGAGCTGGCAGGACAGCTGGCGGCTGGAGGAGGCGACAGTGAGGAGATCCCCACCAAGAGCCATTCTCAGCAGGACCCGTCCGGCGCTCCTCTCTCTGTGGCTCCTTACGGTCATGCGTCAGGTCCAGTACTGCCACAGAGCCAGCAACATGTCCAGTCTACAGACGGCTCCGCACCGCTCTTTTGTTTGTCCACAGGAGCCACTATACCTTTCTTCACTGATGGGAACGCAACGCCGGTGCCCACGTCCTGTCCACTCATCCTGCCCCCCGAATATAGCACCTGGGAATACCCACATG
Seq A exon
GTGAGTGATCTAGGTGGAAAGTAGCGCCCTGTATGTTTAGCTGGGTTTTTGTGTTTAAAAACGAACACCATAATATGCAGTTGAAGTCAAAATTATTAGCCCCCTTTGAATTTTTTTTTCTTTTTTAATTAATTTCCCAAATGATGGAAATTTTTACAATATGTCTGATAATAATTTTTCTTCTAGAGAAAGTCTTATTTATATCTTATTTTGGCTAGAATAAAAAAACATTTTAAAGTCAAAATTATTAGTCCATTTAAGCTATATATTTTTTCAATGGTCTATAGAACAAACCATCGATATACAAAAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAATTAATCTAGCCTTTAAATGTCGCTTTAAGCTGTATAGAAGTGTCTTGAAAAACATCTAGTAAAATCTTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGTTGACAAAGTCCGTTAAACAGAAATTTGGGAACAAAATTAACAGGCACGGCTAATAATTCAGGGGGGTTTATAATTCTGACTTCAACTGTATGCATAATCAATATAGCTAAACACATTTTAAACAGTGAAGAAAACATTTCTTTTTTTGATAATTCAAATGTTTTATTTTCCTCAATTTATCAGTGCCATCAGTTTACACATTTTTACTTCCTTTTAACACCCTCTTTCCCCTCCCCAACAGCGGCAGTTACAGTAATTAGATGTTGCTATCATAAGTCCAGTAAATACAGATAAATAATATAAGATAATTACACTTTTACTATGCATCTCACCCCTGGGACCTTATTCATCCTCCAAAAATTATTTCCCCATCTTCTCTTATAAACATCTAATTTATCAAGTATTCTATGTAATTTTTTCATATGCTGCCACCTTCCCCAATTCTGTAACCCATGCTTGAAATGGTGGTGGTGGACCTGCTAAACGCCATCCCCTCATAATGATTTGTCGTCCAATCATAATACTTATTTGAATCTACTTAGACATCTTCACACCAGACCGTGCAGATTGCATAAGTTTTATAAATATATATATATATTTAAACTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATTTATTATTTATATTATTTATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTATTTTACCAAGAAATTATCAGCATTTGGTATCTTTGCTTGAACTGACCAGATCATCCTGTTTATTTGAAATAAACCTGCTCTTGCGCAGGTTTGATCTATTAAAACTGTTACTATGACAACAAGTCTCAGATGAGTTTTGAAGAGCGAAACGATCCTGGATCATGTGAAAACGTTGACATCCAGCTAATTGAGTAATCCAGCTAATTCAGAAATCCATGTATGAAGAACGGACCCCTGGTGGTTACATACGCATAATCAATTCAGACCACACAAGCAACAATCTTTGCATCAGCTATGTGCTAGTTCATGATAACTACATGCTGCCATATTATCAATTTGCTAACTTGCCTAGAAACATGCTAAGGCGCAAAAGAAAGCTTTTTTCGTTCTGCCATGTTCAGAATTCGATCATTTATGTTGAAACATGCTTTGTTGAAACACGTCATATGCTAGCAATTTGCTAGTTTACCTAGAAACATATTGGCAATAGCTCATGCTAGAAACTTCCTAAAACATGTTAGCAACATGCCAATTCATGTTAGAAACATGTTTACAACTCAGCCAAGTTAGCAGTTTGTTCATTTACATAGAACCATGCTAGCAATATTTGAAGCCATGTTTTGGGGTTCAGTTGGTTTTATATGGTCTAAATTTGCTCTTTCACAATTTTAGAAACTATAAGATTTATTTATTTAGTTTGTTTGTTGTTGTTTTGTACAGTGACTTTAAATAATGGACATGAGTACAACATCCAAACGTATTTTGTGCTCCAATTTAATCAGATTTTCTTCATTTACTCTAATTTTCAG
Seq C2 exon
AGCCTCCTCCTACTTACGAGGAAAGCTGCAGTAGCAACAACTCGAGCTTCAACAGTAGCATGAGGTAGACGTCGACAATTCAGACGTCCTGCTTCTTCATTATGCCATTCATATGCTGCCCCCTGCTGGATGGTACAGGCATTGCTGCCACCCTCTCCATCAACCAAATATCCTGAAAACTCTAGGATAATTTCCTTACAATTTGTAGTTAATCCCCTCATATCATAATTTCAGCAGAAAACAAGCGGGGAGAAGGTTTCAGTGCCTAAGAAGACGTAGCACTCAACAAAACCCCACTCAGAGATTTTGCGAAATAAATACCAGCATCTGAAGCATTTTGAAGTGAAAGTTACACTTTTTCATTCAACCAAGCCTGGCCTTATGTGAAGTTCATCAGAGAATGTGCTTAGTAAAATAATTCTGCCTGACCGGGGGAATAAATCAAACGGATATGATTCTGGCATGATTTACGCAAGCAGCGGTGGCTCTGAACCAAAACACTGGGCCGCAGAAAACGTTACTCTGCAAAGAACAAGTTTATTTATTAAAGGTGATTGATGGGACTTTTTTACTCATCACCAAACAGACACTGTGTGGATACAGCTTGGAAATACCAATGTAGACGCCATCATGGGCACATAAGTCGTTATCGCTTGGCCGAATGGTAGCCGAGGTCCCTTGAAGAATGCTTAAGGGAACAGTATATTCCATCGTTTCTGAATGAAAACTACTTTTCCTGCCTGTCGAGGGATTTTCAAAGCAAACATCAGACTGCTGACTCATTTCTGTTATCATATTTTACACCAAACAAAAACAATATACTCATCTTTTTTCTTTTTTAGATCTCACAGTTCCACCCTGGAGTTATTATACAGACAATAGTCCTGTTTTTCAGAGTTTGCATCATGTCAATGCTGGTAAAATGGAAAGATATCAGTAATGTGCATCATCTGAAATCTAATTTTATTTGAAATCAATAATGAATTGACTTCTAGTTGATCATTTGGAAAAGTGACAGACGGTAGATTTTACAGATGAATCACCTATTAAACTGCAGCTCAATCATCACAAATACTGCAGAGGACCTACTGGAACACATGGACCCAAGATTTTCACAGAAATCAGTCAAGTTTGGTGAAGGAAGAATCATAGTTAAAAACAAAGAAGGTCAAGGTGCTCCAGGATTGGCCAACCCAATCACTAGACATGAATATTATTGAGCATGTCTTGGGTAAAATGAAGGAGGAGGCATTGAAGATGAATCCAAAGAATCCAAACTTTTTTTCTCAGCAAAGTCAGACCTTACTGTCCTAATTAAATAATTAAAAATCAAGGCATGATCATATTTAAATTAAATAAGCATAATCTAGAGGCCTTTCATATAAGCCACTTCTGATACTAAATGATCAACTAGAAGTCAAGTCATTATTTGTTGTTCCTAAAACTTAGATAGGCGACAAGACTTTTGTCAGGTAATGTACATGTCTTTTGTATGTGACTTTTGGTCGTATTCATCAATATTTCTCACATTATCCCACAACAAATGGAGATTTATGATGGATTTCCGGTGAGGCCTTAGGCTGTCGTGTACAGTCCTTTAATATGGCAAACACATTTGTTTTTTTCATGTTGATCAGTTCAGACTCTTGAACTGTTGGAGAATTTGAAAAATTGAAGCACAAAAAGGCACTTTTATGTGTTTGTATATGTTTATGTGTGTGTGTGTGTGAATGTTTTCTCCACTTCCTCTTCAAAATATGAATAATCATTTTTCTATTTTAGATCAGTATTGTTATTGTTTTATTTAGTTCTTGATTTAGCATGGAAAGAAAGTCTGATTCGGAACACAACAGACACATAAATCATGTTCTGTGTTATTTTAAATGACCAAAATAAAATAAAGTTTTCGGTACTCATTTCTGGATTTTGTTTGAGATTCATGCGCTATGTTTCATTTGCAGTGATGACAGAAAGTAATAATCAGGTCATTCTGCTAAAAAAAGGTGCCATTTGTGTACTTCAAATGAACCAATAGATTAATAGAAGAAAAATAATAATACTTGAACATTGATTTTTAAATGATCTGTTTTCTGGCCTACTTAAAATTTGACATTTTGATTGGACATAGATTTTTTTAAGTTTTAGGTAATGTTTTATTTTTATTTAATTATATTCTAACTATTTTAAAGATTCAAAACACTTTAATTAGTTAGTATAATTGTGAATTTTGTTGAGAAAATCTGAACATTGATTGTTTGTTGAATATTCACTGTGAAAATACTATTTGAAAACATTAAAACAGATTAGTGCAGTTCATTACTTAAAAACTGTATTATAGTAGGTTTTTGAAAAATGGTGTACTTAAAAAAAAAAAATCACTTTTTTAGACTTCAAAAGGCACATATTTTAGAGAATGGCCCATTCAAATTCATATCAAGGGGCTTTATGCTGATTGCATCCCCGCAGGCCACTGTGACTTTTAACAGCAGCTAAACGTAAATTCAGATTCTGTTTCTTCACTGTAAGTGCTGAAATCTAAGTGAATGCATACATTGTAAAAAAAGATCTGAAAAAGAGCGTTAAAATTGCATGTCAGTGATTTGAAGTTCTGTAAATGTTCAACCACATTTTGCCTTAAATGTAAATCTGAAGCATCGCTGGTCCCATTATACAGTAATTTAAAAAAAGAATGTTGCATCAGATGTATTGCTCATTTGTCTCTCGAGCCTCTTTAGCTTTCTGTTGGCATCAGAAATCAGAAAGTGTCGTAGGAGAAAGTATAGATGATAATTTGTAGCAGTGCAAGTGAAAGAAATAATTCCTACGTCCTCCATTTTTGTAAATGCTGAAGTTGCGGTATGGATGTACACTTCTTCATGGCTTATGTACATGTATTATGTTCTTTTTTTTTTTTTTTTTTTTTTTTTACTTTTAACCAAAGTTTCAGCAGCTTTATCAAGTTTCATTTCATTACGTGGTACTTTTCTTTCCCTGGATTTTCCAGCAGGATTCGAAATAAAGTAGCACGATTGTGGATCGATGTTTTATGTGAAGTTGTTAAACAGAATCAAACTTGTACAGCAAAAGTAATAAAATCACTTTAATTCTCATTTTTACCCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079839:ENSDART00000114096:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.909
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=12.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]