BtaINT0021744 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105541714-105542512:-
Coord C1 exon
chr11:105542092-105542512
Coord A exon
chr11:105542019-105542091
Coord C2 exon
chr11:105541714-105542018
Length
73 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACCTGGCTGTCTCCCTGCAGAGG
3' ss Score
11.41
Exon sequences
Seq C1 exon
GTCTCCCTGAAACAACCGGAAGCTGTCGTGACGCTGCCGGTCTTCATCGGCAACATCGCTGTGAACCATGTTCCATTGAGCCCCCGGCCAGGCCCCGGCCTGGTGGTGCCCTCAGCGCCACCCCAGGAGGAGGCGGAGGCTGTGGCCAGCGGCCCTCACTTCTTCTCGGATCCTGTCTCTCTCTCCACCAAGAGCCACTCCCAGCAGCAGCAGCTGCATGCAGCCCTTGGCTCTGTGCCCCATGGTGCCCCAGAACCCCGTCCTCAGGATGGCAGCCCTGCCCCGCACCCTCTGCCACCTCCCTTGTGCATCTCCACAGGTGCCACCGTGCCCTACTTTGCAGAGGGTTCTGGAGGTCCGGTGCCCACCTCCAGCACCCTGATCCTCCCCCCAGAGTACAGCTCGTGGGGCTACCCCTATG
Seq A exon
GTGAGTGGGGGCCTGGGGCCTGGTGGGGAGGGAGTGCCCCGGGCCCTGTGCAGACCTGGCTGTCTCCCTGCAG
Seq C2 exon
AGGCCCCGCCGTCCTATGAGCAGAGCTGTGGTGGTGTGGACCCTGGCTTGACCCCGGGGAGCTGACCCCATGCCACCTCCTCTGGATGGGCGGCCCTCTGCCCTGGGACTGGGCTCCCAGGACCTCGTGCCTTCACTCCTGGCCTGGCCCGGCCCACTCAGGACCCGCTGCTGCCCGCTCTTCCCGTGGCCTCTACCTCCGGACCAGCCTCTGCCCCGGCCAGCCTCCTCAGCTCCCCAGCAGTCGGCCTCTCCCAGGGGGTTGGGGCCTAGAGAGACGCGGTGTAAATAAAGTGATTCATTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147:ENSBTAT00000032616:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.582 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=14.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTACTTTGCAGAGGGTTC
R:
ATCCAGAGGAGGTGGCATGG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development