HsaINT0012826 @ hg19
Intron Retention
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:28633]
Coordinates
chr9:140509011-140509812:+
Coord C1 exon
chr9:140509011-140509452
Coord A exon
chr9:140509453-140509525
Coord C2 exon
chr9:140509526-140509812
Length
73 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACCCTGCTTTCTTCCCGCAGAGG
3' ss Score
12.82
Exon sequences
Seq C1 exon
GTCTCTCTGAAGGCGCCGGAAGCTACTGTGACCCTCCCGGTCTTCATTGGCAATATTGCTGTGAACCATGCCCCAGTGAGCCCCCGGCCAGGCCTGGGGCTGCCTCCTGGGGCCCCACCCCTGGTGGTGCCTTCCGCACCACCCCAGGAGGAGGCTGAGGCTGAGGCTGCGGCTGGCGGCCCCCACTTCTTGGACCCCGTCTTCCTCTCCACCAAGAGCCATTCGCAGCGGCAGCCCCTGCTGGCCACCTTGAGTTCTGTGCCTGGTGCGCCGGAGCCCTGCCCTCAGGATGGCAGCCCTGCCTCACACCCGCTGCACCCTCCCTTGTGCATTTCAACAGGTGCCACTGTCCCCTACTTTGCAGAGGGCTCCGGGGGGCCAGTGCCCACTACCAGCACCTTGATTCTTCCTCCAGAGTACAGTTCTTGGGGCTACCCCTATG
Seq A exon
GTGAGTCGACAGCCAGGGCTTGGCAGGGAGGGGACGCCAAGAGCCCCACGCAGACCCTGCTTTCTTCCCGCAG
Seq C2 exon
AGGCCCCACCGTCTTATGAGCAGAGCTGCGGCGGCGTGGAACCCAGCCTGACCCCTGAGAGCTGACCCCGTGCTGCCTTCTCCAGGCAGGCCTGGCCTCTGCCCTGGGACTGGGGCGCCCAGGGCCTCGTGCCTTCTCTCTTGGCCTAGCCTGGCCCACTCAGGACCTGCCCAGCCTCTGCCAGCTCCTCTGGCATCCGCCCTCTTCTCCCTGGGGCTGGGGTGGGGGTGGCAGGGAGCTGGGACCTGGAGAGACAACTCCTGTAAATAAAACACTTTATTTGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-ARRDC1:NM_152285:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=13.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTCAACAGGTGCCACT
R:
GTCAGCTCTCAGGGGTCAGG
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)