MmuINT1004763 @ mm10
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24925352-24926194:-
Coord C1 exon
chr2:24925756-24926194
Coord A exon
chr2:24925677-24925755
Coord C2 exon
chr2:24925352-24925676
Length
79 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATCCTTCTTTCTCCCCACAGAGG
3' ss Score
12.16
Exon sequences
Seq C1 exon
GTCTCCATGAAGGCACCTGAGGCCACCGTGACTCTCCCACTATTTGTTGGCAATATTGCTGTGAACCAAACTCCACTGAGTCCCTGTCCAGGCCGAGAGTCTTCTCCTGGGACCCTATCCCTAGTGGTGCCCTCTGCACCACCCCAGGAAGAGGCTGAGGCAGTGGCTAGTGGCCCTCACTTCTCAGACCCAGTTTCTCTCTCCACCAAGAGCCACTCTCAGCAGCAGCCACTGTCGGCTCCCTTGGGTTCTGTGTCTGTCACCACCACTGAGCCCTGGGTTCAGGTTGGAAGCCCTGCTAGACATTCTCTGCACCCTCCCTTGTGCATCTCTATAGGTGCCACTGTCCCCTACTTTGCAGAAGGCTCTGCGGGCCCAGTACCCACCACCAGCGCCTTGATCCTCCCTCCAGAGTACAGTTCATGGGGCTACCCCTATG
Seq A exon
GTGAGTGGAACTGACAGGGACTGGGATGAGAAAATGAGGATGCCCTAAGCCCCTTGTAGATCCTTCTTTCTCCCCACAG
Seq C2 exon
AGGCCCCGCCGTCCTATGAGCAGAGCTGTGGTGCTGCTGGTACAGACCTTGGCCTGATCCCAGGAAGCTGACCCTGGTGTGCTAACCCATACCACCTTGTTCGGTGGTTCTGGCCTTTGCCTTGGCATGGAATGTCCAGGGCCTCGTGCCTTTGCTCTCTACCTGGCTCAGCTACTCAGGACCTGCAGCTGTCGGGATGACCCCTTGTGGACCAGCCACTCCTGGCTCCTCTGGAATTACTCAGTCCTCCTCTTAAGAGGTTGGGGTAGGGCGGCAGAGATCTGGGCCTGGAGAGACTGTATAAATAAAGCGCTTTATTTGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972:ENSMUST00000028349:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=13.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCTGCACCCTCCCTTGT
R:
GCACCACAGCTCTGCTCATAG
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types