DreEX0015020 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25892888-25914928:-
Coord C1 exon
chr5:25914829-25914928
Coord A exon
chr5:25897936-25898053
Coord C2 exon
chr5:25892888-25893121
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGTCTTTCTTTCAGCTT
3' ss Score
11.71
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AGGTTCTTGGGAGGAGAGCTCCAGTTCCAGCGAGCCCTCTCTAACAGCCTTAACCCACGTCCACACGCGCACACTGACTGCCCGACTGCCAACATCAAAG
Seq A exon
CTTTTGCGCTCTCTCGCTCTCTGCCTTTGCTCGCCGCTGGGCACATCATCTGCTCCTGTCTGTCCGCATAGGGGGATGTCTGTCCTCTAACTGCCTCTCTCTCTCCACTAACTGATAG
Seq C2 exon
CATTTAATTTTGTGGGCTGCTATGGAAGACTATGACGTGCCGTCAGCCGCTAGTATCCTGGCATCAGTCAAAGAGCAGGAGGCACGCTTCGAGCGTCTGACAAGGGCTCTCGAAGAGGAACGCCGCAATGTCTCCCTGCAGCTGGAGCGCGGCAGCCTGCCCTCTGATCGACTGCTGGGTGGCAACACAGGCGGAACCAACCAACCACTGGCCTGGCAGCAGATGGTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688-'3-5,'3-4,4-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.860
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTTGGGAGGAGAGCTC
R:
CCAGCTGCAGGGAGACATTG
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]