DreEX0015024 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25805143-25898053:-
Coord C1 exon
chr5:25897936-25898053
Coord A exon
chr5:25892888-25893121
Coord C2 exon
chr5:25805143-25805301
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTACCCTGCTCTGTAATCAGCAT
3' ss Score
7.01
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTTTTGCGCTCTCTCGCTCTCTGCCTTTGCTCGCCGCTGGGCACATCATCTGCTCCTGTCTGTCCGCATAGGGGGATGTCTGTCCTCTAACTGCCTCTCTCTCTCCACTAACTGATAG
Seq A exon
CATTTAATTTTGTGGGCTGCTATGGAAGACTATGACGTGCCGTCAGCCGCTAGTATCCTGGCATCAGTCAAAGAGCAGGAGGCACGCTTCGAGCGTCTGACAAGGGCTCTCGAAGAGGAACGCCGCAATGTCTCCCTGCAGCTGGAGCGCGGCAGCCTGCCCTCTGATCGACTGCTGGGTGGCAACACAGGCGGAACCAACCAACCACTGGCCTGGCAGCAGATGGTCATGCAG
Seq C2 exon
GAGCAGAGCCCCAGTAACCAGACCTCTTTGGCCATGATGCAGGAGCCACAGGAGGTGGTGGAGGAGACCGTGACCATAGAGGAGGACCCCGGCACACCCACCTCGCATGTGTCTGTGGTCACCTCTGAGGACGGGACAACACGCCGCACAGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.860 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF104324=bact-PGI_C=PU(68.1=92.5)
Main Skipping Isoform:
ENSDART00000169292fB1344
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCGCTCTCTGCCTTTG
R:
CTTAGTCTCTGTGCGGCGTG
Band lengths:
269-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]