RnoEX0011992 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86746086-86789286:-
Coord C1 exon
chr11:86789235-86789286
Coord A exon
chr11:86754012-86754242
Coord C2 exon
chr11:86746086-86746244
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGTTTTGCCTGCAGGCT
3' ss Score
11.36
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAACAGAGTCCACAAGATGGGCATTAGGACATGCTGAGACCCCCTGAAATAG
Seq A exon
GCTGCTGGCACCCTGGTCATGGAGGACTGCAATGTGCATTCGGCCGCCAGCATTCTGGCCTCGGTGAAAGAACAGGAGGCCCGATTCGAGCGGCTGACACGGGCACTAGAGCAAGAACGGCGCCACGTCGCCCTGCAGCTGGAGCGTGCCCAGCAGCCTGGCATGAGCAGTGGTGGTATGGTGGGCAGTGGGCAGCCCCTGCCAATGGCCTGGCAGCAGCTGGTTCTGCAG
Seq C2 exon
GAACAGAGCCCGGGTAGCCAGGCATCGCTGGCCACGATGCCAGAGGCACCTGAGGTGCTGGAGGAGACAGTGACTGTGGAGGAAGACCCTGGCACCCCCACCTCTCATGTATCCATTGTCACATCAGAAGACGGTACAACCCGGCGGACTGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'3-9,'3-7,11-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.775 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGATGGGCATTAGGACA
R:
CTTAGTCTCAGTCCGCCGGG
Band lengths:
202-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]