GgaEX0027489 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1121866-1187867:-
Coord C1 exon
chr15:1187802-1187867
Coord A exon
chr15:1174055-1174299
Coord C2 exon
chr15:1121866-1122024
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTCCATTTGCCCATGTCAGTTA
3' ss Score
5.86
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGTTATCATCGAATCAAGGGAGAATTTCTACTGTAAAGCTGCTGTGAGAAAAGAACACTGTAAAAG
Seq A exon
TTAACAGGCAGGAGCATTTGAAAGCAATCATGGATGACTATGATATCAGGTCTGCTGCCAGCATTTTAGCATCTGTTAAGGAGCAAGAAGCTCGTTTTGAGCGGCTTACCCGTGCACTCGAGGAAGAGCGGCGCAATGTCTCCTTGCAACTTGAGCGTGCCAATCAGCCCGCAGACCGAATGAGCATTTGCAACATTGGCAATGGTCAGCCACTGGCAACCGCCTGGCAGCAGCTTGTACTGCAG
Seq C2 exon
GAACAAAGCCCCAGTAACCAGACATCTATAGCAATGATGCAAGAACCTCAGGAAATGGTGGAAGAAACAGTTACTGTGGAGGAGGATCCAGGAACCCCCACTTCCCACGTGTCTATTGTCACTTCTGAGGATGGAACAACAAGGAGAACTGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX3-2/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.572 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATCATCGAATCAAGGGAGAA
R:
GGTTTCAGTTCTCCTTGTTGTTCC
Band lengths:
222-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]