GgaEX0002483 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1121866-1187867:-
Coord C1 exon
chr15:1187802-1187867
Coord A exon
chr15:1129471-1129509
Coord C2 exon
chr15:1121866-1122024
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTTCTTTTTTCTGTTTTAGATG
3' ss Score
11.56
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AGTTATCATCGAATCAAGGGAGAATTTCTACTGTAAAGCTGCTGTGAGAAAAGAACACTGTAAAAG
Seq A exon
ATGAAGGACCTAGCTTGTACTTCTGACTCCTATGTGCAT
Seq C2 exon
GAACAAAGCCCCAGTAACCAGACATCTATAGCAATGATGCAAGAACCTCAGGAAATGGTGGAAGAAACAGTTACTGTGGAGGAGGATCCAGGAACCCCCACTTCCCACGTGTCTATTGTCACTTCTGAGGATGGAACAACAAGGAGAACTGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX3-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.462 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000003170fB269
Main Skipping Isoform:
ENSGALT00000003170fB268
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTGTGAGAAAAGAACACT
R:
GTTCCTGGATCCTCCTCCACA
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]