GgaEX0002483 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1138408-1182308:-
Coord C1 exon
chr15:1182208-1182308
Coord A exon
chr15:1146358-1146396
Coord C2 exon
chr15:1138408-1138566
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTTCTTTTTTCTGTTTTAGATG
3' ss Score
11.56
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CGGGAGGCTGCGCGCTCCGAGGGGTCGCGGGGAGCGGGGCGCGTCTCGGCGAGGGGCGGTGCAGCCGGCGCCGTGCATCCATGCCTGCGGAACTCGAACAG
Seq A exon
ATGAAGGACCTAGCTTGTACTTCTGACTCCTATGTGCAT
Seq C2 exon
GAACAAAGCCCCAGTAACCAGACATCTATAGCAATGATGCAAGAACCTCAGGAAATGGTGGAAGAAACAGTTACTGTGGAGGAGGATCCAGGAACCCCCACTTCCCACGTGTCTATTGTCACTTCTGAGGATGGAACAACAAGGAGAACTGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040-'2-1,'2-0,5-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.462 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATGCCTGCGGAACTC
R:
GTTCCTGGATCCTCCTCCACA
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]