GgaEX0027490 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1138408-1205002:-
Coord C1 exon
chr15:1204937-1205002
Coord A exon
chr15:1195500-1195601
Coord C2 exon
chr15:1138408-1138566
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCCTCTCTTATAGCTG
3' ss Score
12.19
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AGTTATCATCGAATCAAGGGAGAATTTCTACTGTAAAGCTGCTGTGAGAAAAGAACACTGTAAAAG
Seq A exon
CTGGTTCTGCTTGAGGCTGCTGTCCTACTTTGTCAATACTTTCCTAGTCTTAGTGAGTGATGTCACAGCATCTTTGACATTCAGACACCAGTAATCCACTAG
Seq C2 exon
GAACAAAGCCCCAGTAACCAGACATCTATAGCAATGATGCAAGAACCTCAGGAAATGGTGGAAGAAACAGTTACTGTGGAGGAGGATCCAGGAACCCCCACTTCCCACGTGTCTATTGTCACTTCTGAGGATGGAACAACAAGGAGAACTGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX3-1/2=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATCATCGAATCAAGGGAGAA
R:
TCAGTTCTCCTTGTTGTTCCATCC
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]