Special

ENSG00000099889 @ hg38

Biotype
protein_coding
Gene Symbol
ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:HGNC Symbol;Acc:HGNC:728]
Coordinates
chr22:19969896-20016808:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
120
chr22:19971216-19971335
-
55.64
100
0
Exon Skipping
54
chr22:19972358-19972411
-
94.89
27.08
0
Exon Skipping
199
chr22:19973119-19973317
-
94.63
35.26
0
Exon Skipping
18
chr22:19976706-19976723
-
15.27
86.85
1
Exon Skipping
54
chr22:20010455-20010508
-
89.15
40.63
0
Exon Skipping
228
chr22:19990585-19990812
-
89.25
62.06
0
Exon Skipping
147
chr22:19983673-19983819
-
8.91
23.62
0
Intron Retention
948
chr22:19975758-19976705
-
7.09
54.24
0
Intron Retention
550
chr22:19971336-19971885
-
14.53
67.37
0
Intron Retention
472
chr22:19970744-19971215
-
20.58
50.02
0
Intron Retention
8493
chr22:19982092-19990584
-
20.21
91.35
0
Intron Retention
968
chr22:19980243-19981210
-
31.24
64.89
0
Intron Retention
662
chr22:19979081-19979742
-
24.3
58.39
0
Intron Retention
821
chr22:19978076-19978896
-
4.56
60.36
0
Intron Retention
371
chr22:19977587-19977957
-
9.91
62.22
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000000325 Arvcf 1-to-1
Mouse mm9 ENSMUSG00000000325 Arvcf 1-to-1
Rat rn6 ENSRNOG00000001888 Arvcf 1-to-1
Cow bosTau6 ENSBTAG00000002411 CTNND1 2-to-1
Chicken galGal4 ENSGALG00000002040 ARVCF 1-to-1
Chicken galGal3 ENSGALG00000002040 ARVCF 1-to-1
Zebrafish danRer10 ENSDARG00000061688 arvcfb 1-to-2
Zebrafish danRer10 ENSDARG00000074329 arvcfa 1-to-2
Fruitfly dm6 FBgn0260799 p120ctn 7-to-1