Special

ENSG00000099889 @ hg19

Biotype
protein_coding
Gene Symbol
ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:HGNC Symbol;Acc:728]
Coordinates
chr22:19957419-20004331:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
120
chr22:19958739-19958858
-
52.15
100
0
Exon Skipping
54
chr22:19959881-19959934
-
95.69
21.96
0
Exon Skipping
199
chr22:19960642-19960840
-
94.7
35.26
0
Exon Skipping
18
chr22:19964229-19964246
-
14.88
86.17
1
Exon Skipping
54
chr22:19997978-19998031
-
90
40.63
0
Exon Skipping
228
chr22:19978108-19978335
-
90.89
36.89
0
Intron Retention
948
chr22:19963281-19964228
-
6.89
54.24
0
Intron Retention
550
chr22:19958859-19959408
-
13.54
50.66
0
Intron Retention
472
chr22:19958267-19958738
-
20.26
50.02
0
Intron Retention
8493
chr22:19969615-19978107
-
13.11
47.39
0
Intron Retention
968
chr22:19967766-19968733
-
31.5
64.13
0
Intron Retention
662
chr22:19966604-19967265
-
24.53
58.39
0
Intron Retention
821
chr22:19965599-19966419
-
3.82
60.36
0
Intron Retention
371
chr22:19965110-19965480
-
8.76
62.22
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000000325 Arvcf 1-to-1
Mouse mm9 ENSMUSG00000000325 Arvcf 1-to-1
Rat rn6 ENSRNOG00000001888 Arvcf 1-to-1
Cow bosTau6 ENSBTAG00000002411 CTNND1 2-to-1
Chicken galGal4 ENSGALG00000002040 ARVCF 1-to-1
Chicken galGal3 ENSGALG00000002040 ARVCF 1-to-1
Zebrafish danRer10 ENSDARG00000061688 arvcfb 1-to-2
Zebrafish danRer10 ENSDARG00000074329 arvcfa 1-to-2
Fruitfly dm6 FBgn0260799 p120ctn 7-to-1