MmuEX0006309 @ mm10
Exon Skipping
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18352786-18397117:+
Coord C1 exon
chr16:18352786-18352837
Coord A exon
chr16:18389160-18389390
Coord C2 exon
chr16:18396959-18397117
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGTTTTGCCTGCAGGCT
3' ss Score
11.36
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAACAGAGTCCACAAGATGGGTGTTAGGACATGCTGAGATCCCCCGAAATAG
Seq A exon
GCTGCTGGCACCCTGGTCATGGAGGACTGCAACGTGCATTCGGCCGCCAGCATTTTGGCCTCGGTGAAGGAACAGGAGGCCCGTTTCGAGCGGCTGACACGGGCACTAGAACAAGAACGGCGCCATGTTGCCCTGCAGCTGGAGCGTGCCCAGCAGCCTGGCATGAGCAGTGGTGGTATGGTGGGCAGTGGGCAGCCCCTGCCAATGGCCTGGCAGCAGCTGGTTCTGCAG
Seq C2 exon
GAGCAGAGCCCGGGTAGCCAGGCATCGCTGGCCACGATGCCAGAGGCACCCGAGGTACTGGAGGAGACAGTGACTGTGGAGGAAGACCCTGGCACCCCCACCTCTCACGTGTCCATCGTCACATCAGAAGATGGTACAACCCGGCGGACTGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.775 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGTGTTAGGACATGCTGA
R:
CTTAGTCTCAGTCCGCCGGG
Band lengths:
196-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types