DreEX0015028 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25787063-25805301:-
Coord C1 exon
chr5:25805143-25805301
Coord A exon
chr5:25802175-25802195
Coord C2 exon
chr5:25787063-25787682
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTGTTCCTAAAAGGAC
3' ss Score
7.71
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGCAGAGCCCCAGTAACCAGACCTCTTTGGCCATGATGCAGGAGCCACAGGAGGTGGTGGAGGAGACCGTGACCATAGAGGAGGACCCCGGCACACCCACCTCGCATGTGTCTGTGGTCACCTCTGAGGACGGGACAACACGCCGCACAGAGACTAAG
Seq A exon
GACAATGTGACTAATATGAAG
Seq C2 exon
GTCACTAAAATGGTCAAGACGGTGACGACACGAACAGTTCGGCAGGTGCCATTGGGTCCTGATGGCCTTCCTGTTCCAGAAGGATCGTCTCCACTGGGAAGCTACACTGACTCTATTGATCGTCGCTACATGAAGAACGGCGAGCGCTTCATCACACCCCAGGCCACCTCCACACTTACGCGCTCATACAATAATTACAGTGACTCCTACAACGACACCCCAGACACTCAGTTCCGCCATTACACTCTTCACGATGGATATGGAGACATGCCTGACAATTATGGAAGTCTCTCTCGTGGGGTCAATTACAGGCCCTATCGGCCCTACATGCCCACAGGTGGATACCGCCCGGAGAACAGCTACACCCTTCCTATCCGCAAGGATGACTACGGCCACGTGGCACAGCCTCAAGTCCCAATGGGAAGTAGCACTGTTGATCTCAATCGTTCTCAGCCGGAGCGCTTCCAGCCTGAACCCTATGGCCTGGAGGATGACCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688_MULTIEX3-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.995
Domain overlap (PFAM):
C1:
PF104324=bact-PGI_C=PU(68.1=92.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000146070fB1346
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCATAGAGGAGGACCCC
R:
TCGTCACCGTCTTGACCATTT
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]