DreEX0015029 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25787063-25805301:-
Coord C1 exon
chr5:25805143-25805301
Coord A exon
chr5:25796556-25796672
Coord C2 exon
chr5:25787063-25787682
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGACATGCTTTCACTATAGGTC
3' ss Score
9.71
5' ss Seq
CCAGTAAAG
5' ss Score
-1.17
Exon sequences
Seq C1 exon
GAGCAGAGCCCCAGTAACCAGACCTCTTTGGCCATGATGCAGGAGCCACAGGAGGTGGTGGAGGAGACCGTGACCATAGAGGAGGACCCCGGCACACCCACCTCGCATGTGTCTGTGGTCACCTCTGAGGACGGGACAACACGCCGCACAGAGACTAAG
Seq A exon
GTCACCAAGGTGGTTAAAACCATCACACGCCGAACCTTCCAGCCGGTGATCCTGACCGAGTCCAAACCATCCACTCCTGTTCCTCCATCTACACCAACACCATCTGAGACCAAACCA
Seq C2 exon
GTCACTAAAATGGTCAAGACGGTGACGACACGAACAGTTCGGCAGGTGCCATTGGGTCCTGATGGCCTTCCTGTTCCAGAAGGATCGTCTCCACTGGGAAGCTACACTGACTCTATTGATCGTCGCTACATGAAGAACGGCGAGCGCTTCATCACACCCCAGGCCACCTCCACACTTACGCGCTCATACAATAATTACAGTGACTCCTACAACGACACCCCAGACACTCAGTTCCGCCATTACACTCTTCACGATGGATATGGAGACATGCCTGACAATTATGGAAGTCTCTCTCGTGGGGTCAATTACAGGCCCTATCGGCCCTACATGCCCACAGGTGGATACCGCCCGGAGAACAGCTACACCCTTCCTATCCGCAAGGATGACTACGGCCACGTGGCACAGCCTCAAGTCCCAATGGGAAGTAGCACTGTTGATCTCAATCGTTCTCAGCCGGAGCGCTTCCAGCCTGAACCCTATGGCCTGGAGGATGACCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688_MULTIEX3-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.897 C2=0.995
Domain overlap (PFAM):
C1:
PF104324=bact-PGI_C=PU(68.1=92.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTTGGCCATGATGCAG
R:
GTAGCTTCCCAGTGGAGACGA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]