DreEX0015258 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31221316-31223194:+
Coord C1 exon
chr21:31221316-31221413
Coord A exon
chr21:31221504-31221581
Coord C2 exon
chr21:31223117-31223194
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTAATCCTTTTAGAGA
3' ss Score
8.12
5' ss Seq
CAGGTGTAT
5' ss Score
3.09
Exon sequences
Seq C1 exon
GTTGCAACTGATATGCGACTCTGGTTACGGGATGGTATTGCCACGCTTAAAGAACTGGCTTTGCAACTCATCAACACTATGGTGGAAAGAGCTGCAGC
Seq A exon
AGAGATTGAAATCCTGTGCCCAGGATACACTCACATGCAGAGAGCCCAGCCAATCAGATGGAGTCACTGGCTTCTCAG
Seq C2 exon
TCATGTAGTGGCAATAAGCAGGGATGTTGAGCGGCTGGAGGACATCAGGAAACGTGTTAATGTGATGCCACTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
PF0020615=Lyase_1=FE(11.4=100)
C2:
PF0020615=Lyase_1=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGATATGCGACTCTGGT
R:
AGTGGCATCACATTAACACGT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]