RnoEX6064099 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30171330-30173869:+
Coord C1 exon
chr12:30171330-30171427
Coord A exon
chr12:30173600-30173677
Coord C2 exon
chr12:30173792-30173869
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTCCCCTACCACAGGGA
3' ss Score
9.17
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGTCACGGACCTCAGGCTGTGGATGAGGCAAACCTGCTCAAAACTCTCCACCTTCCTCAAGGTGCTCATTGAAGCCATGGTAGACCGGGCAGAGGC
Seq A exon
GGAGTGTGAAGTCCTCTTCCCTGGGTACACACACTTGCAGAGAGCTCAGCCCATCCGCTGGAGCCACTGGATCCTGAG
Seq C2 exon
TCACGCCGTTGCGCTGACACGAGATTTAGAGAGACTGAAGGAGGTGCAGAAGCGGATCAATGTCCTGCCACTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
PF0020615=Lyase_1=FE(8.8=100)
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGGACCTCAGGCTGTG
R:
CCAGTGGCAGGACATTGATCC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]