DreEX0018211 @ danRer10
Exon Skipping
Gene
ENSDARG00000002167 | cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
Coordinates
chr3:16015278-16021840:-
Coord C1 exon
chr3:16021731-16021840
Coord A exon
chr3:16017217-16017225
Coord C2 exon
chr3:16015278-16015429
Length
9 bp
Sequences
Splice sites
3' ss Seq
ACATAAACTTTTACAGGCAGACC
3' ss Score
0.52
5' ss Seq
TGTGTGCTT
5' ss Score
-10.83
Exon sequences
Seq C1 exon
AATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGG
Seq A exon
ACCTTTTGT
Seq C2 exon
CTGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002167-MICROEX1-2/2
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.1=100)
A:
PF0062516=Guanylate_kin=FE(1.6=100)
C2:
PF0062516=Guanylate_kin=FE(27.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGCAAACACACCATCAT
R:
GTCCGAGCCAGCTCAAAGATT
Band lengths:
96-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]