GgaEX1012542 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4110834-4111764:-
Coord C1 exon
chr27:4111655-4111764
Coord A exon
chr27:4111325-4111333
Coord C2 exon
chr27:4110834-4110985
Length
9 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTGCTCCTGATACAGATG
3' ss Score
8.46
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GATCTCCATCACGCGGGTGACGGCCGACATCTCCCTCGCCAAGCGCTCTGTGCTGAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACACGCTCCAGCCTGG
Seq A exon
ATGTCTTGG
Seq C2 exon
CTGAGGTGCAGAGTGAGACGGAGCGCATCTTCGAGCTGGCCCGGACCCTGCAGCTGGTGGCCTTGGACGCCGACACCATCAACCACCCGGCCCAGCTGGCCAAGACCTCCCTGGCACCCATCATCGTCTACATCAAAATCGCCTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(1.6=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Inclusion Isoform:
ENSGALT00000043800fB5703
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGCTGAACAACCCCAG
R:
GAAGATGCGCTCCGTCTCAC
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]