DreEX0018228 @ danRer10
Exon Skipping
Gene
ENSDARG00000055565 | cacnb2b
Description
calcium channel, voltage-dependent, beta 2b [Source:ZFIN;Acc:ZDB-GENE-050208-129]
Coordinates
chr2:31517653-31520411:+
Coord C1 exon
chr2:31517653-31517762
Coord A exon
chr2:31519443-31519451
Coord C2 exon
chr2:31520251-31520411
Length
9 bp
Sequences
Splice sites
3' ss Seq
CTCACATTGCTGTATCTCAGATG
3' ss Score
7.53
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
AATAACTATCACCCGAGTGACTGCGGATATTGCACTTGCCAAGCGGTCGATCCTCAACAACCCCAGCAAACACGCCATAATGGATCGCTCCAACACCCGCACCAATTTAG
Seq A exon
ATGCCGCGG
Seq C2 exon
CCCTTACAGCTCAAATCCAAGGAGAGGTTGAGAGGATTTTTGAGTTAGCACGCAGTCTACAGCTTGTGGTTCTGGATGCTGACACTATTAACCACCCTCTTCAACTAAGCAAGACCTCCTTGGCCCCGATCCTGGTGTATGTCAAGATTTCATCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055565-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.500 C2=0.011
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.1=100)
A:
PF0062516=Guanylate_kin=FE(1.6=100)
C2:
PF0062516=Guanylate_kin=FE(28.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACACCCGCACCAATTTA
R:
AGCATCCAGAACCACAAGCTG
Band lengths:
102-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]