GgaEX0029123 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19011401-19020491:-
Coord C1 exon
chr2:19020382-19020491
Coord A exon
chr2:19014455-19014463
Coord C2 exon
chr2:19011401-19011552
Length
9 bp
Sequences
Splice sites
3' ss Seq
TTAATGCTCTCCCTTTCCAGATG
3' ss Score
12.26
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TATATCAATTACAAGAGTCACAGCAGACATCTCGCTTGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCATGCGATAATAGAGCGATCCAACACAAGATCAAGCTTAG
Seq A exon
ATGTTTTGG
Seq C2 exon
CTGAAGTTCAGAGTGAAATTGAACGGATTTTTGAATTAGCAAGGACACTGCAGTTGGTAGTGCTCGATGCTGACACCATAAATCACCCAGCGCAGCTGAGCAAAACCTCTCTGGCACCCATTATAGTATACGTAAAGATTTCTTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(1.6=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Inclusion Isoform:
ENSGALT00000013988fB3702
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCCAACACAAGATCAAGC
R:
CATCGAGCACTACCAACTGCA
Band lengths:
95-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]