DreEX0018839 @ danRer10
Exon Skipping
Gene
ENSDARG00000069748 | capn5b
Description
calpain 5b [Source:ZFIN;Acc:ZDB-GENE-091116-29]
Coordinates
chr21:22173785-22177755:+
Coord C1 exon
chr21:22173785-22173906
Coord A exon
chr21:22176448-22176498
Coord C2 exon
chr21:22177619-22177755
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTGACCGCACACAGAGC
3' ss Score
5.77
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAATTAACTCTGGACGAGCCTCCACAGACATGCTGGACTGGGATGTGTGGATACCCTCAGCTGGTCACACAGGTGCATGTGTTAAGTGCCGAGGGCCTGCAGGGCCAAGACGCTAATGGAG
Seq A exon
AGCTGCACTGCTTGATCTCCCACAAGACTCACTCTGACTTTTGCACACGAG
Seq C2 exon
CCTCTGACCCGTATGTGATCATCACCTGTGAGGGGGAGAAGGTCCGCTCTCCTGTGCACAAGGACACGCGCTGCCCTAATTTTGACATCAAGGGAATATTCTACCGCAAAAAGCCAAAGGAAGGCATTCACATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069748_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0),PF0016825=C2=PU(22.5=42.9)
A:
PF0016825=C2=FE(17.5=100)
C2:
PF0016825=C2=FE(56.2=100)
Main Inclusion Isoform:
ENSDART00000101732fB1699
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGCTGGACTGGGATGTG
R:
CTCCCCCTCACAGGTGATGAT
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]