DreEX0021080 @ danRer10
Exon Skipping
Gene
ENSDARG00000002365 | cers5
Description
ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
Coordinates
chr22:5733938-5740805:-
Coord C1 exon
chr22:5740713-5740805
Coord A exon
chr22:5735582-5735710
Coord C2 exon
chr22:5733938-5734044
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTATGTTGTGTGTCTTTCAGGAT
3' ss Score
12.07
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGCTGACCTCAGGCCTGTATTATTATTATGTAACAGAACTGGCCTTCTACTGGTCGCTCATGTTCTCTCAGTTCACAGACATCAAAAGAAAG
Seq A exon
GATTTCCTCATCATGTTCATTCATCATCTGGCCACCATCGGCCTGATCAGTTTCTCATATGTAAATAACATGTTGCGTGTGGGAAGTTTGGTCATGTGTGTTCATGATGCCTCCGACTTCCTGCTGGAG
Seq C2 exon
GCGGCAAAGTTAGCAAACTATGCCAAATACCAGCGTGTGTGTGACGTGGTGTTTGTGATATTCGGGATAATCTTCTTCGGGACGAGATTGATCATTTTCCCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002365_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACCTCAGGCCTGTATT
R:
AGGGGAAAATGATCAATCTCGTCC
Band lengths:
195-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]