MmuEX0026170 @ mm9
Exon Skipping
Gene
ENSMUSG00000023021 | Lass5
Description
LAG1 homolog, ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99569837-99571467:-
Coord C1 exon
chr15:99571375-99571467
Coord A exon
chr15:99570033-99570161
Coord C2 exon
chr15:99569837-99569943
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTCTCCATCCCTAGGAC
3' ss Score
11.17
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
CCACTCTCGAGAGAGCTGTATTACTATTACATCACACAACTGGCTTTCTACTGGTCTCTTATGTTTTCTCAGTTTATAGATGTTAAAAGAAAG
Seq A exon
GACTTCCTGATGATGTTTATTCATCATATGATTGGCATTATGCTCACCACTTTCTCCTACGTCAACAACATGGTGCGAGTGGGAGCACTCATCTTCTGTCTGCATGACTTCGCAGACCCCTTACTGGAA
Seq C2 exon
GCTGCCAAGATGGCCAATTATGCCAGACGTGAGCGGCTCTGTACCACCCTTTTTGTGATCTTTGGCGCAGCTTTTATAGTTTCTCGTCTAGCAATCTTCCCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(39.5=100),PF0379811=TRAM_LAG1_CLN8=PU(0.1=0.0)
A:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(9.2=19.4),PF0379811=TRAM_LAG1_CLN8=FE(44.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAGAGCTGTATTACTATTACAT
R:
CACAATGGGAAGATTGCTAGACGA
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: