DreEX0021084 @ danRer10
Exon Skipping
Gene
ENSDARG00000053583 | cers6
Description
ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
Coordinates
chr9:49188256-49198607:-
Coord C1 exon
chr9:49198550-49198607
Coord A exon
chr9:49192102-49192152
Coord C2 exon
chr9:49188256-49188348
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTTTGATTTTAAAGAGC
3' ss Score
6.18
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTGGCGGTTCTCGTTTTACCTGTACATATTTACGTACGGTGTGCGCTTCCTGAAGAAG
Seq A exon
AGCCCGTGGCTGTGGAACACCAGAGAGTGCTGGTACAACTACCCCTATCAG
Seq C2 exon
CCGTTAACAGTGGATCTACATTACTACTATATACTGGAGCTCTCTTTCTACCTGTCGCTGCTCTTCTCGCAGTTCACAGACATCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053583-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGTTCTCGTTTTACCTGT
R:
CTGTGAACTGCGAGAAGAGCA
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]