DreEX0021168 @ danRer10
Exon Skipping
Gene
ENSDARG00000069435 | cfap58
Description
cilia and flagella associated protein 58 [Source:ZFIN;Acc:ZDB-GENE-060929-128]
Coordinates
chr1:47159200-47175963:+
Coord C1 exon
chr1:47159200-47159359
Coord A exon
chr1:47173438-47173520
Coord C2 exon
chr1:47175772-47175963
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGTGTTTTTCTTAGAAA
3' ss Score
9.39
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATGAAGGAAGAGGAAGTAACTCAGCTGAAACAGGAGATCACTAAACTTACCAGACTGAGAGAGGGGGCGCAGAGGAGACTCAGACAGATGGAGGAGCAGAAAGCAGAGGTGGAGAATCAGAGAGAAACACTCAAGAATCAAATCACTGGACTAGAGAGAG
Seq A exon
AAATGGAGGCCTCAAAGAATCAGATTGATGCGGACAAGAAGGCGATAGATGAACTGGTGCGGGAGAGGGACATCCTGAATAAG
Seq C2 exon
AATATGATCAAGGCGGCGAATGAAACAGACAAACAGCAGACCCTTGTGAAGCTCCATGAACAGTCCAAGAAGACGCTGGAGCACGAGATCCTAAACTACAGGGACGAAGCCCAGAAACAGAGAAAGATCATTTACCAGCTGGAGAAAGAGAGGGATCGCTATATAAATGAGGCCAGCGAGCTCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069435_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.571 C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAAGCAGAGGTGGAGAA
R:
TTTCTGGGCTTCGTCCCTGTA
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]