GgaEX6040928 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25743594-25746292:+
Coord C1 exon
chr6:25743594-25743753
Coord A exon
chr6:25744862-25744944
Coord C2 exon
chr6:25746101-25746292
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATACTCTTCCTTTTCTCTAGAGT
3' ss Score
9.06
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAGAGATGATGAACTGACTCAAATGCACCTTGAAATTTCGAAGATGAACAAAGTAAGAGATGTTCTCCAGAGTAAGCTACGTGCTGCAGAGGATAAGAAAGTTGCTGCAGGACATGAGAGAGAGACCCTAAAAAGGCAAATATCTGGTCTAGAGAGAG
Seq A exon
AGTTGGAGGCTGCCAAAAAGCAAGCAGAGATTGACAAGAAAGCTATTGACGATCTTGTGAGGGAAAGGGATACACTAAGCAAG
Seq C2 exon
AACTTGAACAAGGCCACCAATGCTGTTCAGAAGCAGACAGATTTGGTGAAACTCCATGAACAGTCCAAGAAAAATTTAGAAGACGAAATTCAAAATTATAAGAATGAAGCTCAGAAACAAAGGAAGATTATTTACCAGTTGGAGAAGGAGAGAGATTGTTTCATCAATGAAGCCAGTGATCTCAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.071 C2=0.359
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(48.6=100)
A:
PF138511=GAS=FE(24.8=100)
C2:
PF138511=GAS=PD(20.2=34.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGACTCAAATGCACCTTGA
R:
AGCATTGGTGGCCTTGTTCAA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]