DreEX0021211 @ danRer10
Exon Skipping
Gene
ENSDARG00000039579 | cfd
Description
complement factor D (adipsin) [Source:ZFIN;Acc:ZDB-GENE-050522-411]
Coordinates
chr13:13550884-13552990:+
Coord C1 exon
chr13:13550884-13551028
Coord A exon
chr13:13551190-13551331
Coord C2 exon
chr13:13552730-13552990
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATGTCTGTTGCAGGAG
3' ss Score
11.3
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTGACTGTATCACGGGAGGGCAAGAGGCTAAAGCACACTCTCGCCCGTACATGGCTTCAGTTCAGTGGAATGGAAAACATGAATGTGGTGGCTTTCTGATCTCCAGTCAGTGGGTCATGAGTGCTGCACATTGCTTTCAGGATGG
Seq A exon
GAGGACATCTGGTGTTAAGGTTGTTTTGGGTGCTCACTCGTTGTCTGGAGCCGAGGACACAAAGCAAACTTTTGATGCTGAAGTATACAACCATCCTGATTTCAGCATTAGCAACTATGACAATGACATTGCCCTGATTAAG
Seq C2 exon
TTGGATAAGCCAGTCACTCAGAGCGATGCAGTCAAACCAGTGAAATTCCAGCGTGATGAGACGGCTGACCCTAAAGAAGCTGCTGTTGTAGAAACGGCTGGTTGGGGCTCATTGAACAACATGGGAGGACGACCTGACAAACTTCATGAGCTCAGTATCCCAGTAATGGAGCGATGGCGCTGTGGCCGTGCTGACTTCTATGGAGAGAAGTTTACCAGCAACATGCTCTGTGCTGCAGACAAAAGAAAGGACACCTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039579-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.2=91.8)
A:
PF0008921=Trypsin=FE(21.1=100)
C2:
PF0008921=Trypsin=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGGTCATGAGTGCTG
R:
CTCCATAGAAGTCAGCACGGC
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]