GgaEX1015077 @ galGal4
Exon Skipping
Gene
ENSGALG00000027497 | CFD
Description
complement factor D (adipsin) [Source:HGNC Symbol;Acc:HGNC:2771]
Coordinates
chr28:2751577-2752512:+
Coord C1 exon
chr28:2751577-2751730
Coord A exon
chr28:2751846-2751990
Coord C2 exon
chr28:2752255-2752512
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCCCGCACCCCGCAGGGG
3' ss Score
10.7
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CACAGCCCCGGGGGCGGATCCTGGGGGGCTCGGAGGCGCAGCCCCACCGACGGCCCTACATGGCCTCCCTGCAGCTGGACGGGCAGCACATCTGTGGGGGATTCCTCATCGCCCCACAGTGGGTGCTGAGCGCCGCGCACTGCACCGAGCAGAT
Seq A exon
GGGGGATAAACGCTTCCAGGTGCTGCTGGGCGCCCATTCACTGACGGAACCGGAGCCCCACAAACGGCTCTACGACGTGCGGGCACAAATCGCCCACCCCGGCAGCAACATCCACAACAACCGGGACGACCTCCTGCTGCTCCAG
Seq C2 exon
CTGGAGGAGAAAGCGGAGCTGAACGAACACGTGCAGCCGCTGCCGTTCCAACGCGAGGACCGGGAGGTGGCGGCCGACACGCTTTGCAGCGCCGCGGGATGGGGGACGGTGACGCACAGCGGGAAGCGGCCGGATCGGCTGCAGGAGGTGCAACGCCCGGTGATCAGCAGAGAGCTCTGCAACCACCGCACCCGCCACGACCGCACCATCACCGAGAAGATGATGTGCACCGACTCCCGCAAGAAGGACACGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027497-'2-5,'2-2,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.184 C2=0.453
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.2=86.5)
A:
PF0008921=Trypsin=FE(21.5=100)
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGGGGATTCCTCATCG
R:
CGGTGGTTGCAGAGCTCTCT
Band lengths:
252-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]