DreEX0021236 @ danRer10
Exon Skipping
Gene
ENSDARG00000104205 | cfhl3
Description
complement factor H like 3 [Source:ZFIN;Acc:ZDB-GENE-050208-423]
Coordinates
chr22:23745789-23754554:-
Coord C1 exon
chr22:23754444-23754554
Coord A exon
chr22:23753778-23753854
Coord C2 exon
chr22:23745789-23745971
Length
77 bp
Sequences
Splice sites
3' ss Seq
AAAAAATTCTATGTTCATAGGTA
3' ss Score
6.4
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
CAGAAAACAAAACCTACCGTCATTTGTGAAATGCAATCAAAATGCAAGCTCCTGTACAAATCCACATTTTTTTCTGTTTCCTATTTTCTGTTACCTTCGTACAATGTCAAG
Seq A exon
GTATGAAATGGCAAGCAGAAACAATCGTCGTCACTGTAGAATTAAAGGATGGGATAATTCCATCCCTGTCTGTGAGG
Seq C2 exon
TAACCTGTCAGCTTGATATAACTGAAACTGGAGTGATAAAACCCATTCCAGAGGGGAAAACCGTTTTCAAAGCTGGAGAAAGTGTGAGACTTATCTGCTCTGACATAAACTCACAGTTTTTCAGACAGGAAACATTTACATGCACAAATAATGGGAAGTGGGATCATAAACCAACCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104205_MULTIEX1-3/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(3.5=8.3)
A:
PF0008415=Sushi=PD(42.1=88.9)
C2:
PF0008415=Sushi=WD(100=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACCGTCATTTGTGAAATGC
R:
AAAACGGTTTTCCCCTCTGGA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]