DreEX0021234 @ danRer10
Exon Skipping
Gene
ENSDARG00000104205 | cfhl3
Description
complement factor H like 3 [Source:ZFIN;Acc:ZDB-GENE-050208-423]
Coordinates
chr22:23745789-23754554:-
Coord C1 exon
chr22:23754444-23754554
Coord A exon
chr22:23754173-23754340
Coord C2 exon
chr22:23745789-23745971
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTGTGCGACTCAGAAT
3' ss Score
5.52
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CAGAAAACAAAACCTACCGTCATTTGTGAAATGCAATCAAAATGCAAGCTCCTGTACAAATCCACATTTTTTTCTGTTTCCTATTTTCTGTTACCTTCGTACAATGTCAAG
Seq A exon
AATGTCTTCGAGAGGGAATTACATATGAAAACATAACACCAGTTGAGAAGGCATCATACGATGATGGTGAAACAGTGAAATTGAACTGCATGACAGGTTATTTTGGCTTTTATAAGTTGAAGTGTAACAAAGGACAATGGCAGACCTTTATTGCACGAAGTTGCTCAA
Seq C2 exon
TAACCTGTCAGCTTGATATAACTGAAACTGGAGTGATAAAACCCATTCCAGAGGGGAAAACCGTTTTCAAAGCTGGAGAAAGTGTGAGACTTATCTGCTCTGACATAAACTCACAGTTTTTCAGACAGGAAACATTTACATGCACAAATAATGGGAAGTGGGATCATAAACCAACCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104205_MULTIEX1-1/5=C1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(3.5=8.3)
A:
PF0008415=Sushi=PD(94.7=94.7),PF143191=Zn_Tnp_IS91=PU(78.2=75.4)
C2:
PF0008415=Sushi=WD(100=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCAAAATGCAAGCTCCTGT
R:
TCCCACTTCCCATTATTTGTGCA
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]