MmuEX6027907 @ mm10
Exon Skipping
Gene
ENSMUSG00000026368 | F13b
Description
coagulation factor XIII, beta subunit [Source:MGI Symbol;Acc:MGI:88379]
Coordinates
chr1:139501702-139506951:+
Coord C1 exon
chr1:139501702-139501812
Coord A exon
chr1:139503761-139503961
Coord C2 exon
chr1:139506766-139506951
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTGAGTTTTCCTCATTTCAGAGA
3' ss Score
7.55
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TCCTGGGTGCTTTAGAGCTGTAAAAATCTTCATGAGACACACTGATGATGACGCTGAGACACTTGCCATTTATTCTTTTATTAATCCTCTCAGGAGAACTCTATGCAGAAG
Seq A exon
AGAAACAGTGTGATTTTCCTACCGTGGAAAATGGAAGGATTGCCCAATATTATTATACGTTTAAAAGCTTTTACTTCCCCATGAGCGTAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACA
Seq C2 exon
AGAAATGTCTGAAGCCTGACCTAAGGAATGGCTACGTCTCCAATGACAAAGTACTGTACAAACTTCAAGAGAGGATGAGCTACGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026368-'0-6,'0-2,3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
ENSMUST00000027615fB9667
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGTAAAAATCTTCATGAGACA
R:
CTTGTTCTTTCCTGCAGGACG
Band lengths:
284-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types