GgaEX6043506 @ galGal3
Exon Skipping
Gene
ENSGALG00000002369 | F13B
Description
NA
Coordinates
chr8:2658697-2659914:+
Coord C1 exon
chr8:2658697-2658763
Coord A exon
chr8:2659066-2659266
Coord C2 exon
chr8:2659729-2659914
Length
201 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTATCTCTTTGCAGATA
3' ss Score
11.75
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAGATGAGATTTAAAAGCTATTTTTTCTTCCTAGTTATGATGAATTCAGGAAACATCTTTGCGGAAG
Seq A exon
ATAAACTTTGTGATTTGCCGCATGTAGAAAATGGAAGGATTGCCCCATATTATTACAGTTTCAAAGGTTACTATTTCCCTATGCGTAAAGGAAAAAGCCTTTCCTATTCTTGTGTGGCTGGTTATACAACTGAAACCGGGACTCAGGATGGAAGAATAACTTGTATGGCGAAAGGATGGTCTCCGGTGCCACGATGCTACA
Seq C2 exon
AAAAATGTAATAAGCCTCTTCTGGAACATGGCGTGTTTTACGGTACAGAAATGTACTTCAACATACACGAGAAACTACAATACAAGTGTAACCAAGGGTACCACGCTCCCAGTGGCGGTACCGAAGATACGGTACAATGTCAGTCAGATGGATGGTCTTCCCAGGCAAGCTGTACTAAGACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002369-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTAGTTATGATGAATTCAGGA
R:
CCACTGTCTTAGTACAGCTTGCC
Band lengths:
228-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]