BtaEX0013604 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000070 | F13B
Description
Bos taurus coagulation factor XIII, B polypeptide (F13B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038529]
Coordinates
chr16:77848141-77852926:+
Coord C1 exon
chr16:77848141-77848223
Coord A exon
chr16:77850384-77850584
Coord C2 exon
chr16:77852741-77852926
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTATTCTTTACTCATTTCAGAGA
3' ss Score
8.1
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATAAAACACACCACAGAAGATGAGGTCAAAAAGCTTGGCTTTGATTATCATATTAATCATCTCAGGAGAACTCCATGCAGAAG
Seq A exon
AGAAGCCCTGTGGTTTTCCTAGTGTGGAGAATGGGAGGATTGCCCAATATTACTATATTTTTGAAAGCTATTACTTTCCAATGAGCATAAACCAAAATCTGGCATTTTCCTGCTTGGTTGGTTATACGACTGCAACTGGAAAACGCGAGGCGCGGACCACGTGTACGGCGGCAGGCTGGTCTCCAGAACCACGGTGCTTCA
Seq C2 exon
AAAAGTGCCCTAAGCCTGACTTGAAGAATGGTTACATCTTTGATTCAAAATTATCTTACAAAATACAAGAGAACATGCGCTATCGTTGCACATCAGGATACAAAACCATGGCAGGGCAGGATGAAGAAGTGGTTCAATGCCTTGCTGATGGGTGGTCTCCCCAGCCAACCTGTAGCAAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000070-'2-4,'2-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACACACCACAGAAGATGAGG
R:
CATGTTCTTTGCTACAGGTTGGC
Band lengths:
268-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development