RnoEX6044491 @ rn6
Exon Skipping
Gene
ENSRNOG00000012613 | F13b
Description
coagulation factor XIII B chain [Source:RGD Symbol;Acc:1311668]
Coordinates
chr13:56598957-56603703:+
Coord C1 exon
chr13:56598957-56599042
Coord A exon
chr13:56601649-56601849
Coord C2 exon
chr13:56603518-56603703
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTGAGTTTTCCTCATTTCAGAGA
3' ss Score
7.55
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTTCACGAGACATACACTGAAGATGAGGCCGAGACACTTGCCATTTATTCTTATATTAATCATCTCAGGAGAACTCTATGCAGAAG
Seq A exon
AGAAACAGTGTGATTTTCCTGCCGTGGAAAATGGAAGAATTGCCCAATATTATTATACGTTTAAAAGCTATTACTTCCCCATGAGCATAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGAAAATCAGGTGTACAGCGGAAGGCTGGTCTCCAAAACCAAGGTGCTACA
Seq C2 exon
AAAAATGCCTGAAGCCTGTCTTAAGGAATGGCTATGTCTCTGATGGCAAAGTACTATACAAAATTCAAGAGAATATGCGTTACGGTTGCACTTCAGGATACAAAACGACTGGGGGAAAGGATGAAGAAGTGGTCCAGTGTCTTTCTGAAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012613-'0-3,'0-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGACATACACTGAAGATGAGG
R:
TTGTTCTTTCCTGCAGGACGG
Band lengths:
268-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]