HsaEX6035741 @ hg38
Exon Skipping
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr1:197061784-197067267:-
Coord C1 exon
chr1:197067160-197067267
Coord A exon
chr1:197062865-197063057
Coord C2 exon
chr1:197061784-197061969
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTGACATTTACTCATTTCAGAGA
3' ss Score
6.79
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
AGTGCTTAGAATTGTTAAAATCTTTGTGAAGCACACCACTGAAGATGAGGTTGAAAAACCTGACTTTTATCATCATATTGATAATCTCAGGAGAACTCTATGCAGAAG
Seq A exon
AGAAACCCTGTGGTTTTCCTCATGTGGAAAATGGAAGAATTGCCCAATATTACTATACTTTTAAAAGCTTTTACTTTCCAATGAGCATAGACAAAAAATTGTCATTTTTCTGCTTGGCTGGTTATACCACTGAAAGTGGAAGACAAGAAGAGCAAACCACGTGTACAACAGAAGGCTGGTCTCCAGAGCCAAG
Seq C2 exon
AAAAATGCACTAAGCCTGACCTGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGCGTTATGGTTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278-'1-2,'1-1,2-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCACTGAAGATGAGGT
R:
ACAGGTTGGTTGAGAAGACCA
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains