MmuEX6027907 @ mm9
Exon Skipping
Gene
ENSMUSG00000026368 | F13b
Description
coagulation factor XIII, beta subunit [Source:MGI Symbol;Acc:MGI:88379]
Coordinates
chr1:141398284-141407610:+
Coord C1 exon
chr1:141398284-141398389
Coord A exon
chr1:141400338-141400538
Coord C2 exon
chr1:141407507-141407610
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTGAGTTTTCCTCATTTCAGAGA
3' ss Score
7.55
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTGCTTTAGAGCTGTAAAAATCTTCATGAGACACACTGATGATGACGCTGAGACACTTGCCATTTATTCTTTTATTAATCCTCTCAGGAGAACTCTATGCAGAAG
Seq A exon
AGAAACAGTGTGATTTTCCTACCGTGGAAAATGGAAGGATTGCCCAATATTATTATACGTTTAAAAGCTTTTACTTCCCCATGAGCGTAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACA
Seq C2 exon
TGGGGATAAAGTGACATACAGGTGTGGAGGGGGCTACAGTCTCAGAGGATCAAGTACGATAACTTGCAATCGTGGCCGATGGACACTGCCCCCTGAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026368-'0-8,'0-2,2-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.6)
C2:
PF0008415=Sushi=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTAGAGCTGTAAAAATCTTCATG
R:
AACACACTCAGGGGGCAGT
Band lengths:
206-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: