DreEX0021308 @ danRer10
Exon Skipping
Gene
ENSDARG00000063631 | ch1073-291c23.1
Description
ch1073-291c23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-114]
Coordinates
chr13:238074-238784:-
Coord C1 exon
chr13:238746-238784
Coord A exon
chr13:238604-238657
Coord C2 exon
chr13:238074-238139
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCATAACATCTGTCTGAAGCCT
3' ss Score
3.63
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACAGTCTCAGAGCGTCCAGGGGAAGGCTCCCACTCAAG
Seq A exon
CCTTCAGAGGGAGCTCCGTCTATGCCAGTAGGTTTTTACCCCGCACAAACACAG
Seq C2 exon
GTGTGCAGCGTCCAGAGATGAGCGCCACCGTCCGCAGACAGCCGGCTCCGTCAGCTCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063631_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTCTCAGAGCGTCCAGG
R:
GAGGCTGGAGCTGACGGA
Band lengths:
103-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]