DreINT0045855 @ danRer10
Intron Retention
Gene
ENSDARG00000063631 | ch1073-291c23.1
Description
ch1073-291c23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-114]
Coordinates
chr13:238074-241207:-
Coord C1 exon
chr13:241175-241207
Coord A exon
chr13:238140-241174
Coord C2 exon
chr13:238074-238139
Length
3035 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
AGTGTGTGTTTGTATTGCAGGTG
3' ss Score
10.45
Exon sequences
Seq C1 exon
GCAGCAGTCACCCGTATTTCAGCTCTCTTGCAC
Seq A exon
GTAAGTCTTCGCCGCTCCCTCGTGTGGCTCCTGTGGCTGCGCTCTCGTTTCGTTTTATTCCTGCTTTCCGGGTGTGTTTCTGAGTGTTTACAGAGCTGCTGGTCTCTTAAGTGTCTCTTTGGTTTTGTGTTATTGTAGCAACCGTCTGTGTCTGATGGGGTGTGGATGGTGTTTTACTGACAATCGCTTTCTAAGTTCAATCCACTTTAAAGTCAGCATGAAGCAAGGTTTTACTTCACAGCGTGATGACAGAGAGACATTTAATGAAAACAGAATTTTATTCACCAAGAATAAAAAATGCTAAATCTGAGGGATTTGTGGTTAGAGAAACACGTTTCACAGGCAGAGCCGGCGCCAGCCAAGTGTTGATGATGATGCTGATGATGATGATGATGGGGCGTCTGTACCAACAGGGGGCGATCACACTAATGCATATAGTACTCCCAGCTTAAGATGTTGTGTTCCTTATACTTTAACGCACCATAAAACCAACAGATCACTGCTATAACAACATGCAACAAACAACTTCTTTATACAAATGAAAAACACCTAGACCTACATATTAAAAACCCATAATCATGGATAAATAAGCAAGTCTTAGATCAACAGATGTGTGTGTGTATATATTGTTGAAGCCAGAATTATTAGCTCCCCTTTTAATTTTCTTTTTTATTATTTCCCTGATGATGTTGAACAGATTCAGGAAATGTTCACAGTATGTCGATAATATTTGTTCTTCTGGAGAAAGTCTGATTTGTTTTATTTGGGCTAGAATAAAAGCAGTTTTTAATAGTGTTAAAGCCATGTTAAGGTCAATATTATTGGCCCCTTCAGCAATATTAGTGTTGGATTGTCTCCAGAACAAACCACTGTTATACAATGACTTGCCTAATTACCCTAACTTTACCCTAATTACCCTAGTGAAGCCTTTACATGTCACTTTAAGCTGAACACATCAGTTATTAACACTGTTATGATTTGAAATGCGCTGGAGAAATCTGCTCTCTGTTAAGCAGAAATTGGGGAAATATAAACCGGGTGGGGGGGGGTTATAATTCAGTGTGCGAATAATTCAGACTTCAACTGTATTTATGCATCAATTCAGAAGTTTTTCTGCTAATTCATGAAGCAAGCACATTACCACATCAACAACATCAAAAGCATGTTTAACCCTACAAGTTTATTTAACCCCTTAACTCTCGCCGCCACTTTATGAACATAGACATGAAAATGACATGTTCAACTTGAAATATTGTCAATCTTCAACGCTTTGGTGCACAGCTTGGTCTCATTTTACAGAAGACAGATGTCAGATAGTAGCTGGAGTGAAAAAGATTCAGAAAGTTAAATAGATAACAAGTGATGTGTCTTAATGTTTATCGAATTAATCAATAAATGTATGTGTTACTATAATAAACGAAATGTTCATTTTACAAAATACAAAAAAAGTTTTAGCCTAAAATTAACGATAAATAAAGCTACGTATAAGAACAAATTATATTAAATAAACTAAGTTGATATCTCTAAAAATTTGCCTTCAGTAGAATTTTATTTGGCTGCAGTTCCAGACATGACCACCAGGTTTCAGTTTACATTGGTGACATAGGGCGTCATTGTGTTTTGAGAAATATGACCTGTATTTTGTCTTACTTATGACAATAATAGTAAAGTAAACATCATATTCTAAAGTAGTACGTCACCTCTGAAATCATATAAACACTTACATGTGGATTGCTGTAGCCAAGTAATGCTTTACAACTCCTTGACTTTCCTTTTCCAAATAAATAAATAACTGTTGCTCAGTAATAACTATCAAAAATCAGCCAACAGATGTGAAAACTAGACATTTAAGGCTTACAAATGCAATATAGTTTGTTATGATTGTTTTATGTTTAGACTACAATGTTATGTTTTGAATATGTATCCTTAAAAGAACTTAAAATACGCATTCAGTAGTCTTAGACCTTTCCAACTGTATGCAGTCTGTCATGACTAGATTACGATTTAATAGCTAAAACATTGATTCTGTTCAATGAGTGAAGCAAAATTGGCTATTAAACTGTCCTAAACTCAAAGGTTGATATTTTAGCTTATTGCTTACTTTAGGAAATCAGTGCAGTAGGGTCATTTTCTTTCAGAACAGCACATTTTATTATTAAAATCTGTTTTGAATAATGGTAATCTGAATAATCTGAGGGGGTGGGTTAATAATGACACCCTGCATGGCGCCAGCAGTACAGTATATGGACAGTAAAATGACAAGCATTGATGAAGTCTGTATAAACTCAAGCTTTCATGCTGACTCTAAGGTTGCTGTAACAGTTGACTATAAGAGACAGTGAAACATGTAGTGCTTCATTACCTCTGTCCTCTCTAAACACTGCATGCAGGACAGTCTCAGAGCGTCCAGGGGAAGGCTCCCACTCAAGGTACGTCCTGCTTAGATCATCTCCACCTTTCTCACCTCTTCTCTCAGTAGTGAAAAGCTCAAACTCTAACCATAACATCTGTCTGAAGCCTTCAGAGGGAGCTCCGTCTATGCCAGTAGGTTTTTACCCCGCACAAACACAGGTAAAGCACATTATTTATCCTTTTCTTGTGATTTTCGCTCGCTGTGTTGAAGTTTTTTCTGTGTTCAAGCTATTTTGTGTCTAATAGACGTTAAAAGATCCCCCACAGTCCAAACACATGCGCTATAGGGGAACTGATCAACTACACTGGCCGTAGTGTATGAGTGTGTGTATGTGAATGAGTGTGTATGGGTGTTTCCCAGTACTGTGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAACATATGCTGGAATAGTTGGCGGTTCATTCTGCTGTGGTTACCGCTCATTAATAAAGGACTACGAAAGGAAAATGAATGAATGAAAATAAGAAAAAAACAGTCAGTTTGGGAAAAAAACACTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTTTTTCCAGTGATTTAGACGCAGTGTGTGTTTGTATTGCAG
Seq C2 exon
GTGTGCAGCGTCCAGAGATGAGCGCCACCGTCCGCAGACAGCCGGCTCCGTCAGCTCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063631:ENSDART00000137398:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]