DreEX0021949 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43189129-43195458:+
Coord C1 exon
chr19:43189129-43189233
Coord A exon
chr19:43192366-43192392
Coord C2 exon
chr19:43195291-43195458
Length
27 bp
Sequences
Splice sites
3' ss Seq
AACTGTTTCTGTGCCTCTAGGTT
3' ss Score
9.78
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCGGCTACGGACTAAGCAGACTTTATCCACAGCTTCCAGTGTGGGCAGCAGTCAGGTAGACTCCAGAGGCCGGACCAGATCCAAGATGGCGTCCCAGTCACAAC
Seq A exon
GTTCCGACGATTCTGATTGCACGCCAG
Seq C2 exon
CGGGTTCTCGGTCAGGATCCCCAGGCCGGGTTTTGGCCAGCACGGCTCTGAGCACGCTCAGTACAGGAGCTCAGCGTGTGAGTGCAGCTCCAGGCTCTCACCGCCGCAGCCGCATCCCACGCAGTCAAGGCTGCAGTCGAGACTCCAGCCCCACACGCCTGTCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345_MULTIEX1-1/6=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGATCCAAGATGGCGTC
R:
CTCACACGCTGAGCTCCTGTA
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]