DreEX0021951 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43189129-43200659:+
Coord C1 exon
chr19:43189129-43189233
Coord A exon
chr19:43195291-43195458
Coord C2 exon
chr19:43200553-43200659
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTATATTTTCACAGCGG
3' ss Score
7.94
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGCGGCTACGGACTAAGCAGACTTTATCCACAGCTTCCAGTGTGGGCAGCAGTCAGGTAGACTCCAGAGGCCGGACCAGATCCAAGATGGCGTCCCAGTCACAAC
Seq A exon
CGGGTTCTCGGTCAGGATCCCCAGGCCGGGTTTTGGCCAGCACGGCTCTGAGCACGCTCAGTACAGGAGCTCAGCGTGTGAGTGCAGCTCCAGGCTCTCACCGCCGCAGCCGCATCCCACGCAGTCAAGGCTGCAGTCGAGACTCCAGCCCCACACGCCTGTCTGTCG
Seq C2 exon
GTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTGTCATCTTCAGTTAGTGCCATGAGAGTCTTGAACACCGGATCTGACGTGGAGGAAGCCCTGGCAGATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345_MULTIEX1-3/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTACGGACTAAGCAGACT
R:
CAGAGCATCTGCCAGGGCTT
Band lengths:
210-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]