GgaEX6019748 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44734444-44746828:-
Coord C1 exon
chr2:44746720-44746828
Coord A exon
chr2:44741281-44741451
Coord C2 exon
chr2:44734444-44734550
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCATTTTGCCTTCAGCTG
3' ss Score
8.93
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATTATAGGTCGTATACGAACAAAGCTTTCAACACCTTCTCTTGGCATTGGAAATTCTAAAACAGATTCCAGAGGACGGAGTAGAACCAAAGTGGTCTCTCAGTCTCAGC
Seq A exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
Seq C2 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'41-47,'41-44,44-47=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATACGAACAAAGCTTTCAACACC
R:
GCATCTGCTACTGCCTCTTCC
Band lengths:
203-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]