DreEX6037559 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38443640-38448583:+
Coord C1 exon
chr9:38443640-38443666
Coord A exon
chr9:38445982-38446137
Coord C2 exon
chr9:38448422-38448583
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATTCCCTCTTGCAGCCG
3' ss Score
11.42
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GATCCAGATCAGCTAACACAACTAGTG
Seq A exon
CCGGCAGCCGATCCAGTTCACCAGGGAAGCTTTTGGGACATGCGTATGGCAGAATTCCTAGAGCCACTGCGCCAACAACTCCCTCAGACAAGTACTCCAGAATCCCACGAAGCCAGGGATGCAGCCGTGAGACCAGCCCCAATAGACTGGGCATAG
Seq C2 exon
CCAGGCTGTGTGGTAAAGCTCTTCTTCCTGCCACTTCTCCCTATCGCACGCTAGCCCGGAGCAGTCGCATCCCTCGCCCCAGCATGAGTCAAGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACCAGCCCCGCTCGGGGCTTCACTCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280-'28-36,'28-35,29-36=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGATCAGCTAACACAACT
R:
CAGAGGAGTGAAGCCCCGAG
Band lengths:
188-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]