GgaEX6042893 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25639982-25648703:-
Coord C1 exon
chr7:25648596-25648703
Coord A exon
chr7:25645146-25645313
Coord C2 exon
chr7:25639982-25640089
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGTTTCTCTTCTAGCTG
3' ss Score
11.42
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
Seq A exon
CTGGTAGTCGGTCTAGTTCTCCGGGTAAGCTGTTAGGAAGCTCCTATGGTGGCTTGAGCAGTGGAACATCCAGAGTTCAACCTGTGCCATCATCTTCAGAGAAGCGCAGCAAGATCCCCCGGAGCCAGGGATGCAGTCGAGAGACGAGTCCCAACAGAATAGGACTAG
Seq C2 exon
CACGGAGCAGTCGTATCCCCCGACCCAGCATGAGTCAGGGGTGCAGCCGTGATACCAGCCGTGAGAGCAGTCGAGATACAAGCCCTGCTCGGGGCTTTCCTCCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-'30-38,'30-36,32-38=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCGTACGAGGAGGCAGA
R:
AAGTGGAGGAAAGCCCCGAG
Band lengths:
212-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]