BtaEX6010278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73564168-73572364:-
Coord C1 exon
chr2:73572338-73572364
Coord A exon
chr2:73570183-73570350
Coord C2 exon
chr2:73564168-73564275
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGGTTTACTTTTAGCTG
3' ss Score
7.7
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATCCAGATCTGCTAATCCTGCTGGTG
Seq A exon
CTGGCAGCCGATCCAGTTCCCCAGGGAAATTGTTGGGAAGTGGTTATAGTGGCCTTACTGGGGGTTCCTCAAGAGGCCCACCTGTGACACCCTCTTCAGAAAAACGAAGCAAGATTCCCAGGAGTCAGGGATGTAGTCGAGAAACAAGTCCAAACCGCATAGGATTAG
Seq C2 exon
CACGGAGCAGCCGTATCCCTCGACCCAGCACGAGTCAGGGGTGCAGCCGCGATGCCAGCCGTGAGAGCAGCCGGGATACGAGCCCTGCTCGGGGCTTCGCGCCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-'32-31,'32-30,33-31=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCTGCTAATCCTGCTGG
R:
GAGCAGGGCTCGTATCCCG
Band lengths:
114-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]