HsaEX6015326 @ hg19
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122176198-122185006:-
Coord C1 exon
chr2:122184980-122185006
Coord A exon
chr2:122182715-122182882
Coord C2 exon
chr2:122176198-122176305
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCATTTTGCTTCACTTTTAGCTG
3' ss Score
8.6
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GATCCAGATCTGCTAATCCTGCTGGTG
Seq A exon
CTGGCAGCCGGTCAAGTTCCCCAGGAAAATTGTTGGGAAGTGGTTATGGTGGACTTACTGGGGGCTCCTCACGAGGCCCACCTGTGACACCGTCTTCAGAAAAGCGAAGCAAGATTCCCAGGAGCCAGGGATGTAGCCGGGAAACAAGTCCAAACCGAATAGGATTAG
Seq C2 exon
CACGGAGCAGCCGTATCCCTCGACCCAGCATGAGTCAGGGGTGCAGCCGCGATACCAGCCGTGAGAGCAGCCGAGATACAAGCCCTGCTCGGGGCTTTCCTCCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-'39-42,'39-41,40-42=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCTGCTAATCCTGCTGG
R:
AAGTGGAGGAAAGCCCCGAG
Band lengths:
131-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)