GgaEX6042893 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27706085-27722860:-
Coord C1 exon
chr7:27722753-27722860
Coord A exon
chr7:27719303-27719470
Coord C2 exon
chr7:27706085-27706188
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGTTTCTCTTCTAGCTG
3' ss Score
11.42
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
Seq A exon
CTGGTAGTCGGTCTAGTTCTCCGGGTAAGCTGTTAGGAAGCTCCTATGGTGGCTTGAGCAGTGGAACATCCAGAGTTCAACCTGTGCCATCATCTTCAGAGAAGCGCAGCAAGATCCCCCGGAGCCAGGGATGCAGTCGAGAGACGAGTCCCAACAGAATAGGACTAG
Seq C2 exon
ACCGGTTTGGACTCGGACAGTCAGGCAGGATGCCTGCTTCTGTGAATGCCATGCGAGTCCTGAGCACAAGCACAGATCTGGAGGCCGCTGTGGCTGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-'22-36,'22-32,24-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATTCGTACGAGGAGGC
R:
CAGTGCATCAGCCACAGCG
Band lengths:
211-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]